Added a note documenting my current understanding about how the parts of models I want
to be able to modify are loaded.
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<html><head><meta charset="UTF-8" /><title>cc.journeyman.simulated-genetics.utils documentation</title><link rel="stylesheet" type="text/css" href="css/default.css" /><link rel="stylesheet" type="text/css" href="css/highlight.css" /><script type="text/javascript" src="js/highlight.min.js"></script><script type="text/javascript" src="js/jquery.min.js"></script><script type="text/javascript" src="js/page_effects.js"></script><script>hljs.initHighlightingOnLoad();</script></head><body><div id="header"><h2>Generated by <a href="https://github.com/weavejester/codox">Codox</a></h2><h1><a href="index.html"><span class="project-title"><span class="project-name">Simulated-genetics</span> <span class="project-version">0.1.0-SNAPSHOT</span></span></a></h1></div><div class="sidebar primary"><h3 class="no-link"><span class="inner">Project</span></h3><ul class="index-link"><li class="depth-1 "><a href="index.html"><div class="inner">Index</div></a></li></ul><h3 class="no-link"><span class="inner">Topics</span></h3><ul><li class="depth-1 "><a href="intro.html"><div class="inner"><span>Introduction to simulated-genetics</span></div></a></li></ul><h3 class="no-link"><span class="inner">Namespaces</span></h3><ul><li class="depth-1"><div class="no-link"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>cc</span></div></div></li><li class="depth-2"><div class="no-link"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>journeyman</span></div></div></li><li class="depth-3"><div class="no-link"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>simulated-genetics</span></div></div></li><li class="depth-4 branch"><a href="cc.journeyman.simulated-genetics.genome.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>genome</span></div></a></li><li class="depth-4 branch"><a href="cc.journeyman.simulated-genetics.launcher.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>launcher</span></div></a></li><li class="depth-4 branch"><a href="cc.journeyman.simulated-genetics.makehuman-bridge.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>makehuman-bridge</span></div></a></li><li class="depth-4 current"><a href="cc.journeyman.simulated-genetics.utils.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>utils</span></div></a></li></ul></div><div class="sidebar secondary"><h3><a href="#top"><span class="inner">Public Vars</span></a></h3><ul><li class="depth-1"><a href="cc.journeyman.simulated-genetics.utils.html#var-bits-in-genome"><div class="inner"><span>bits-in-genome</span></div></a></li><li class="depth-1"><a href="cc.journeyman.simulated-genetics.utils.html#var-create-binary-string-mask"><div class="inner"><span>create-binary-string-mask</span></div></a></li><li class="depth-1"><a href="cc.journeyman.simulated-genetics.utils.html#var-create-mask"><div class="inner"><span>create-mask</span></div></a></li><li class="depth-1"><a href="cc.journeyman.simulated-genetics.utils.html#var-long-from-binary-string"><div class="inner"><span>long-from-binary-string</span></div></a></li></ul></div><div class="namespace-docs" id="content"><h1 class="anchor" id="top">cc.journeyman.simulated-genetics.utils</h1><div class="doc"><div class="markdown"><p><strong>TODO</strong>: write docs</p>
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<html><head><meta charset="UTF-8" /><title>cc.journeyman.simulated-genetics.utils documentation</title><link rel="stylesheet" type="text/css" href="css/default.css" /><link rel="stylesheet" type="text/css" href="css/highlight.css" /><script type="text/javascript" src="js/highlight.min.js"></script><script type="text/javascript" src="js/jquery.min.js"></script><script type="text/javascript" src="js/page_effects.js"></script><script>hljs.initHighlightingOnLoad();</script></head><body><div id="header"><h2>Generated by <a href="https://github.com/weavejester/codox">Codox</a></h2><h1><a href="index.html"><span class="project-title"><span class="project-name">Simulated-genetics</span> <span class="project-version">0.1.0-SNAPSHOT</span></span></a></h1></div><div class="sidebar primary"><h3 class="no-link"><span class="inner">Project</span></h3><ul class="index-link"><li class="depth-1 "><a href="index.html"><div class="inner">Index</div></a></li></ul><h3 class="no-link"><span class="inner">Topics</span></h3><ul><li class="depth-1 "><a href="Understanding-jme3-character-models.html"><div class="inner"><span>Understanding how jME3 handles character models</span></div></a></li><li class="depth-1 "><a href="intro.html"><div class="inner"><span>Introduction to simulated-genetics</span></div></a></li></ul><h3 class="no-link"><span class="inner">Namespaces</span></h3><ul><li class="depth-1"><div class="no-link"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>cc</span></div></div></li><li class="depth-2"><div class="no-link"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>journeyman</span></div></div></li><li class="depth-3"><div class="no-link"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>simulated-genetics</span></div></div></li><li class="depth-4 branch"><a href="cc.journeyman.simulated-genetics.genome.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>genome</span></div></a></li><li class="depth-4 branch"><a href="cc.journeyman.simulated-genetics.launcher.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>launcher</span></div></a></li><li class="depth-4 branch"><a href="cc.journeyman.simulated-genetics.makehuman-bridge.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>makehuman-bridge</span></div></a></li><li class="depth-4 current"><a href="cc.journeyman.simulated-genetics.utils.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>utils</span></div></a></li></ul></div><div class="sidebar secondary"><h3><a href="#top"><span class="inner">Public Vars</span></a></h3><ul><li class="depth-1"><a href="cc.journeyman.simulated-genetics.utils.html#var-bits-in-genome"><div class="inner"><span>bits-in-genome</span></div></a></li><li class="depth-1"><a href="cc.journeyman.simulated-genetics.utils.html#var-create-binary-string-mask"><div class="inner"><span>create-binary-string-mask</span></div></a></li><li class="depth-1"><a href="cc.journeyman.simulated-genetics.utils.html#var-create-mask"><div class="inner"><span>create-mask</span></div></a></li><li class="depth-1"><a href="cc.journeyman.simulated-genetics.utils.html#var-long-from-binary-string"><div class="inner"><span>long-from-binary-string</span></div></a></li></ul></div><div class="namespace-docs" id="content"><h1 class="anchor" id="top">cc.journeyman.simulated-genetics.utils</h1><div class="doc"><div class="markdown"><p><strong>TODO</strong>: write docs</p>
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</div></div><div class="public anchor" id="var-bits-in-genome"><h3>bits-in-genome</h3><div class="usage"></div><div class="doc"><div class="markdown"><p>Number of bits we’re actually using. <strong>NOTE THAT</strong> as this implementation is based on Java longs, this number must not be more than 63 or else we’ve <em>a lot</em> of rewriting to do.</p>
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</div></div><div class="src-link"><a href="https://github.com/simon-brooke/the-great-game/blob/master/src/cc/journeyman/simulated_genetics/utils.clj#L28">view source</a></div></div><div class="public anchor" id="var-create-binary-string-mask"><h3>create-binary-string-mask</h3><div class="usage"><code>(create-binary-string-mask start end)</code></div><div class="doc"><div class="markdown"><p>Mainly for testing, create a binary string mask with those bits indexed from <code>start</code> (inclusive) to <code>end</code> (exclusive) set, and all others cleared.</p>
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</div></div><div class="src-link"><a href="https://github.com/simon-brooke/the-great-game/blob/master/src/cc/journeyman/simulated_genetics/utils.clj#L43">view source</a></div></div><div class="public anchor" id="var-create-mask"><h3>create-mask</h3><div class="usage"><code>(create-mask start end)</code></div><div class="doc"><div class="markdown"><p>Create a with those bits indexed from <code>start</code> (inclusive) to <code>end</code> (exclusive) set, and all others cleared.</p>
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